GEOparse
stable
GEOparse
Installation
Usage
GEOparse package
Contributing
Credits
History
1.2.0 (2019-08-21)
1.1.0 (2018-09-10)
1.0.5 (2018-01-12)
1.0.4 (2018-01-08)
1.0.3 (2017-11-01)
1.0.2 (2017-11-01)
1.0.1 (2017-08-10)
1.0.0 (2017-07-21)
0.1.10 (2017-03-27)
0.1.9 (2017-03-10)
0.1.8 (2016-11-02)
0.1.7 (2016-05-30)
0.1.6 (2016-04-12)
0.1.5 (2016-02-03)
0.1.4 (2015-09-27)
0.1.3 (2015-08-30)
0.1.2 (2015-08-23)
0.1.1 (2015-08-16)
0.1.0 (2015-08-16)
GEOparse
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Index
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Index
A
|
B
|
D
|
G
|
H
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M
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N
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P
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S
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T
|
U
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W
A
add_log_file() (in module GEOparse.logger)
annotate() (GEOparse.GEOTypes.GSM method)
annotate_and_average() (GEOparse.GEOTypes.GSM method)
B
BaseGEO (class in GEOparse.GEOTypes)
D
DataIncompatibilityException
download_from_url() (in module GEOparse.utils)
download_SRA() (GEOparse.GEOTypes.GSE method)
(GEOparse.GEOTypes.GSM method)
download_supplementary_files() (GEOparse.GEOTypes.GSE method)
(GEOparse.GEOTypes.GSM method)
G
GDS (class in GEOparse.GEOTypes)
GDSSubset (class in GEOparse.GEOTypes)
GEODatabase (class in GEOparse.GEOTypes)
GEOparse (module)
GEOparse.GEOparse (module)
GEOparse.GEOTypes (module)
GEOparse.logger (module)
GEOparse.utils (module)
geotype (GEOparse.GEOTypes.BaseGEO attribute)
(GEOparse.GEOTypes.GDS attribute)
(GEOparse.GEOTypes.GDSSubset attribute)
(GEOparse.GEOTypes.GEODatabase attribute)
(GEOparse.GEOTypes.GPL attribute)
(GEOparse.GEOTypes.GSE attribute)
(GEOparse.GEOTypes.GSM attribute)
get_accession() (GEOparse.GEOTypes.BaseGEO method)
get_GEO() (in module GEOparse.GEOparse)
get_GEO_file() (in module GEOparse.GEOparse)
get_metadata_attribute() (GEOparse.GEOTypes.BaseGEO method)
get_type() (GEOparse.GEOTypes.BaseGEO method)
GPL (class in GEOparse.GEOTypes)
GSE (class in GEOparse.GEOTypes)
GSM (class in GEOparse.GEOTypes)
H
head() (GEOparse.GEOTypes.SimpleGEO method)
M
merge_and_average() (GEOparse.GEOTypes.GSE method)
mkdir_p() (in module GEOparse.utils)
N
NoEntriesException
NoMetadataException
P
parse_columns() (in module GEOparse.GEOparse)
parse_entry_name() (in module GEOparse.GEOparse)
parse_GDS() (in module GEOparse.GEOparse)
parse_GDS_columns() (in module GEOparse.GEOparse)
parse_GPL() (in module GEOparse.GEOparse)
parse_GSE() (in module GEOparse.GEOparse)
parse_GSM() (in module GEOparse.GEOparse)
parse_metadata() (in module GEOparse.GEOparse)
parse_table_data() (in module GEOparse.GEOparse)
phenotype_data (GEOparse.GEOTypes.GSE attribute)
pivot_and_annotate() (GEOparse.GEOTypes.GSE method)
pivot_samples() (GEOparse.GEOTypes.GSE method)
S
set_verbosity() (in module GEOparse.logger)
show_columns() (GEOparse.GEOTypes.SimpleGEO method)
show_metadata() (GEOparse.GEOTypes.BaseGEO method)
show_table() (GEOparse.GEOTypes.SimpleGEO method)
SimpleGEO (class in GEOparse.GEOTypes)
smart_open() (in module GEOparse.utils)
T
to_soft() (GEOparse.GEOTypes.BaseGEO method)
U
UnknownGEOTypeException
W
which() (in module GEOparse.utils)
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